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Supervisors

Recent key publications

Intestinal microflora meets big brother: gut parasites and immunity.

The work demonstrates a critical interaction between the intestinal flora and intestinal dwelling nematode parasites. Also, both types of organism are important for the normal regulation of the immunity suggesting that the intestinal ecosystem should be considered to encompass not only microflora but also larger parasitic organisms, the macrofauna.

K S Hayes, A J Bancroft, M Goldrick, C Portsmouth, I S Roberts, R K Grencis, (2010) Science 328(5984): 1391-4.

Sequencing of the frog genome.

This paper describes the first amphibian genome to be sequenced. The information gained from this genome is highly significant for scientists interested in genome evolution. Also, given that the frog has been a mainstay model organism for cell and developmental biology, this genome has enormous impact in these fields as well.

Uffe Hellsten, Richard M Harland, Michael J Gilchrist, et al, (2010) Science 328(5978): 633-6.

Transcriptional control by repressor/activator competition for binding to a common docking partner.

Transcriptional repressors usually compete with activators through mutual exclusion from a common DNA binding site. Here we uncover a novel mechanism whereby a “docking” transcription factor binds to DNA and a transcriptional activator and a transcriptional repressor compete for binding to the same protein surface of this docking transcription factor.

Zoulfia Darieva, Anne Clancy, Richard Bulmer, Emma Williams, Aline Pic-Taylor, Brian A Morgan, Andrew D Sharrocks, (2010) Molecular Cell 38(1): 29-40.

Stand up straight, legs apart! Integrins get physical to control cell adhesion.

To increase our understanding of how integrin structure relates to function, we have used a variety of approaches to survey the conformation of integrins on adherent cells. We found that extended receptors are enriched in focal adhesions compared with adjacent regions of the plasma membrane.

Janet A Askari, Christopher J Tynan, Stephen E D Webb, Marisa L Martin-Fernandez, Christoph Ballestrem, Martin J Humphries, (2010) The Journal of Cell Biology 188(6): 891-903.

Stressful situations can stunt your growth.

Collagen X immunolocalisation (purple staining) within the tibial growth plate of a wildtype mouse and an MCDS littermate. Mutant collagen X is initially retained inside the cells in the upper part of the expanded hypertrophic zone of the MCDS mouse and its secretion is significantly delayed compared to WT.

M Helen Rajpar, ... David J Thornton, Richard Wilson, John F Bateman, Richard Poulsom, Peter Arvan, Karl E Kadler, Michael D Briggs, Raymond P Boot-Handford, (2009) PLoS Genetics 5(10): e1000691.

Muscle weakness associated with dwarfism - it’s all connected.

Pseudoachondroplasia is a dwarfing condition, primarily affecting long bones. Recently, several patients were diagnosed with a mild myopathy. Using a knock-in mouse model we show that the myopathy is specifically localised to the myotendinous junction and that it stems directly from abnormal changes to tendon.

Katarzyna A Piróg, Oihane Jaka, Yoshihisa Katakura, Roger S Meadows, Karl E Kadler, Raymond P Boot-Handford, Michael D Briggs, (2010) Human Molecular Genetics 19(1): 52-64.

Regulation of motoneurons morphology.

Understanding how neuronal shape is controlled is an essential step to comprehend how functional neuronal circuits are formed. We have uncovered a new molecular mechanism regulating axonal branching in motoneurons, suggesting that calcium may play an important role in morphogenesis.

Niki Panagiotaki, Federico Dajas-Bailador, Enrique Amaya, Nancy Papalopulu, Karel Dorey, (2010) Development (Cambridge, England) 137(23): 4005-15.

Oxidative stress promotes prion formation.

The molecular basis by which mammalian and fungal prions arise spontaneously is poorly understood. Using the yeast [PSI+] prion as a model, we have shown that reactive oxygen species can trigger this event, since cells lacking a key antioxidant defence system form the [PSI+] prion spontaneously at a remarkably high frequency.

Theodora C Sideri, Klement Stojanovski, Mick F Tuite, Chris M Grant, (2010) Proceedings of the National Academy of Sciences of the United States of America 107(14): 6394-9.

The specific research areas that we are addressing within the Wellcome Trust Four PhD Programme are:

  • Gene expression mechanisms at the transcriptional, post-transcriptional and translational levels.
  • Involvement of protein assemblies in organelle biogenesis and function
  • Protein trafficking: particularly during membrane protein biogenesis, the secretion of matrix proteins, and endocytosis
  • Function and regulation of macromolecular assemblies in the cytoskeleton and extracellular matrix
  • Orchestration and control of adhesion by protein assemblies
  • Regulation of protein assembly and function by phosphorylation
  • Cellular signaling pathways and networks.
  • The physiological and genetic relationship of these processes to health and disease

The following list shows the supervisors who participate in the Programme, and their research interests. For more information on each supervisor, follow a link to their home page. Rotation and final PhD projects can be undertaken in any of these labs, although it is possible that some of the listed supervisors might not be available for certain rotations or for your final PhD project. Joint projects are also strongly encouraged to provide a more comprehensive training. To encourage a broad range of training, projects will be grouped according to research skills employed, and first year rotation projects will be selected from three different areas; Molecular biological, Biochemical/Biophysical, Cell biological, Organismal and Computational. This will ensure that you have a broad skillset before undertaking your PhD project.

Viki Allan Microtubule motors in health and disease
Enrique Amaya Growth factor signal interpretation during development, wound healing and regeneration
Hilary Ashe Regulation of cell signalling and gene expression during development
Mark Ashe The localisation and control of translation initiation factors
Clair Baldock Structural studies on microfibrillar components of the extracellular matrix
Christoph Ballestrem Molecular mechanisms in the regulation of cell adhesion and migration
Jordi Bella Structure-function studies of cell-matrix and adhesion proteins
Casey Bergman Genome annotation and functional genomics
Ray Boot-Handford ER stress as a pathogenic factor in cartilage
Mike Briggs Molecular genetics and cell-matrix pathology of human monogenetic bone diseases
Chris Grant Molecular responses to oxidative stress
Richard Grencis Immunity to parasitic infection
Sam Griffiths-Jones RNA genes
Stephen High Membrane protein biosynthesis at the endoplasmic reticulum
Simon Hubbard Bioinformatic approaches to proteomics
Martin Humphries Cell adhesion signalling
Karl Kadler Structure-function and biotechnology of collagen
Martin Lowe Membrane traffic in the secretory and endocytic pathways
Catherine Millar Chromatin mediated regulation of gene expression
Nancy Papalopulu Molecular control of neurogenesis in vertebrate embryos
Janni Petersen Environmental control over cell division and polarised growth
Richard Reece Molecular Mechanisms of Genetic Switches
David Robertson Computational biology and molecular evolution
Matthew Ronshaugen Identification and functional characterization of non-coding RNAs (ncRNAs)
Jean-Marc Schwartz Pathways and biological systems modelling
Andy Sharrocks Molecular mechanisms of eukaryotic transcription factor function
Charles Streuli Adhesion-dependent signalling pathways that regulate differentiation and apoptosis
Lydia Tabernero Structural biology of protein phosphatases and signalling proteins
Stephen Taylor Probing the role of mitotic kinases using molecular and chemical genetics
Chris Thompson Cell fate choice and pattern formation in Dictyostelium
Dave Thornton The role of mucins in the protection of mucosal surfaces
Cathy Tournier Regulation of stress-induced cell death
Gillian Wallis Osteoarthritis: Genetic dissection and potential for gene therapy
Alan Whitmarsh Regulation of cellular signalling pathways during development and disease
Claudia Wellbrock Cellular signalling in melanoma skin cancer
Phil Woodman Investigation into vesicle fusion on the endocytic pathway